Third Indo-US Workshop on
Mathematical Chemistry

With Applications to Drug Discovery, Environmental Toxicology,
Cheminformatics and Bioinformatics

August 2 - 7, 2003
Duluth, Minnesota, USA


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Tentative List of Speakers and Titles

Platform Presentation Titles

  • 103 molecular data predicted using row and column indices, by R. Hefferlin
  • Application of molecular mechanics to metal binding sites in proteins: Size and change selectivity, by J. Riehl
  • Application of novel molecular alignment method using Hopfield Neural Network to 3D-QSAR, by K. Funatsu
  • Applications of chemodescriptors and biodescriptors in predictive toxicology: An integrated approach, by S.C. Basak
  • An array of possibilities with microbial models, by L. Herron-Olson
  • Boiling points of halogenated aliphatic compounds: A quantitative structure-property relationship for prediction and validation, by T. Öberg
  • Characterization of proteomics maps by neighborhood cluster graphs, by Z. Bajzer
  • Classification of pharmacological activity using TFS/ANN, by Y. Takahashi
  • A comparison of CoMFA, HQSAR, and SKEYS/GFA derived quantitative structure-activity relationships for estrogen receptor binding affinities of structurally diverse compounds, by C. Waller
  • Complexity and self-organization of dynamic evolutionary networks, by D. Bonchev
  • Coulson function and Hosoya index: Extension of the relationship to polycyclic graphs and to new types of matching polynomials, by G. Cash
  • A critical distance model for the energy of activation of the Bergman cyclization of enediynes, by A. Mitra
  • Design of directed combinatorial chemistry libraries, by F. Gu
  • Differential protein expression data derived from toxicoproteomics approaches, by F.A. Witzmann
  • DNA invariants based on nonoverlapping triplets of nucleotide bases, by A.T. Balaban
  • Elucidating pharmacophore patterns of drugs that bind to P-glycoprotein, by O. Clement
  • Embarrassment of riches: Statistical issues of having many features, by D. Hawkins
  • Experimental, analytical, and computational challenges of applying proteomic technologies to understanding the health, by J. Pounds
  • Fast lead identification protocol (FLIP) for structure based data mining using 3D fingerprints, by A. Kulkarni
  • Fibonacci and Lucas numbers in cactus skeletons, by H. Hosoya
  • Gene transcript analysis of the blood-brain barrier, by L.R. Drewes
  • A graph representation of the core electrons in molecular connectivity, by L. Pogliani
  • Modeling of quantitative structure-pharmacokinetic relationships, by K. Krishnan
  • Molecular informatics and mathematical chemistry, by P.G. Mezey
  • On parametric TIs: Bridging the gap between ecological statistics and mathematical chemistry, by C. Ricotta
  • Partial order in environmental chemistry and ecological applications, by R. Brüggemann
  • Partial orderings in chemistry, by D.J. Klein
  • Protease inhibitors of mammalian Proprotein Convertases and their cellular delivery in therapeutic applications, by Ajoy Basak
  • Proteomics map invariants based on the neighborhood graphs, by M. Randic
  • QSPR study on the bioconcentration factors of nonionic organic compounds in fish by charateristic root index and semi-empirical molecular descriptors, by M.Turker Sacan
  • Quantum chemistry & graph theory based methods for predictive computational toxicology, by K. Balasubramanian
  • Real-world applications of QSAR models: Drug discovery and optimization, by V. Gombar
  • Self organizing map and counter propagation neural network as a tool in structure-property modelling, by M. Vracko
  • Some relationships between physical chemistry and molecular topology, by J. Galvez
  • Structurally classifying protein binding sites: from drug targets to anti-targets, by D. Sem
  • Theoretical studies of the liquid and solid phase transition of bulk argon system, by C. Muguruma
  • Topological aspects of superconductivity in metal borides, by R.B. King
  • Toward a universal chemical function based three-dimensional pharmacophore model for antimalarial activity using the catalyst methodology, by A. Bhattacharjee
  • Variable subset selection by genetic algorithms: A chance for knowledge or knowledge by chance?, by R. Todeschini
  • Virtual screening and hit-to-lead development in drug discovery, by V.N. Viswanadhan

Poster Titles

  • A 3D QSAR pharmacophore model and quantum chemical structure activity analysis of Chloroquine(CQ)-resistance reversal, by A.K. Bhattacharjee
  • Application of QSTRs in the selection of a surrogate toxicity value for a chemical of concern, by C. Moudgal
  • An assessment of the performance of the rat chronic LOAEL model for a wide variety of chemicals by TOPKAT, a commercial QSAR software, by R. Venkatapathy
  • Characteristics of high-quality data for QSARs: an ER case study, by J. Denny
  • The characterization of molecular branching and helices using distance/distance matrices, by S. Bobst
  • Chemometrics in modeling of analytical processes and in QSAR/QSPR, by M. Vracko
  • A comparison of arbitrary versus tailored similarity spaces in property / toxicity estimation , by B.D. Gute
  • Complexity analysis of protein-protein interaction networks in Saccharomyces Cerevisiae, by D. Bonchev
  • Development of a gene-expression array focusing on the hypothalamus-pituitary-thyroid axis in Xenopus laevis, by J. Korte
  • Estimation of blood:air partition coefficients of volatile organic chemicals using molecular descriptors, by D. Mills
  • Estimation of estrogen receptor binding affinity using theoretical molecular descriptors, by D. Mills
  • Estimation of tissue:air partition coefficients: a comparison of structure- and property-based methods, by D. Mills
  • Hierarchical QSAR analysis for the toxicity prediction of halocarbons, by B.D. Gute
  • Hierarchical quantitative structure-toxicity relationship (Hi-QSTR) modeling of chemical toxicity, by D. Mills
  • Mapping four-atomic molecules and their data in octahedral coordinates, by R. Hefferlin
  • A new chemical index inspired by biological plastic evolution: Valence-isoelectronic series of aromatics, by F. Torrens
  • A proteomic analysis of the blood-brain barrier, by N. Basak
  • QSPRs for melting points of ionic liquids, by S. Trohalaki
  • Quantitative structure-activity relationships for the dermal penetration of polycyclic aromatic hydrocarbons, by A. Balaban
  • Quantitative structure–property relationships with descriptors derived from the distance and reverse Wiener matrices, by A. Balaban
  • The quest for "reliable" data -- insights into the measurement of the octanol-water partition coefficient, part II, by K.B. Lodge
  • A topological index study of highly branched polymers, by K.W. McLaughlin
  • Use of calculated molecular descriptors in quantitative structure activity relationship modelling of 2-substituted isonicotinic acid hydrazine, by M.C. Bagchi
  • Use of calculated chemodescriptors in toxicity prediction of halocarbons, by B.D. Gute
  • Use of topological indices in predicting aryl hydrocarbon (Ah) receptor binding affinity of dibenzofurans: A hierarchical QSAR approach, by D. Mills


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